species:   Scscl
pid:       PID1761
parent:    Ssc-milR-237
paralog:   
locus:     NW_001820829.1:552887-552942
matures:   ['UGUAUAGAGCUUCGUGCUCAAGA', '']
srr:       SRR12527895
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram NW_001820829.1:552887-552942

28 out of bounds
13 alignments
7 proper strand
6 stranded perfect matches

*****************              *************************
AUGAAGGUCUAUAUAAUCAAGAUGGAUUCUCUUUGUAUAGAGCUUCGUGCUCAAGA
((((((.(((((((((...(((.....)))..))))))))).))))))........
---------------------------------UGUAUAGAGCUUCGUGCUCAAGA l=23 a=0 c
-------------------------------------------------------- l=0 a=0 c*
----------------------UGGAUUCUCUUUGUAUAGAGCU------------ l=22 a=2 ma
-------------------------------------------------------- l=0 a=0 ma*

----------------UCAAGAUGuAUUCUCUUUGUAU------------------ l=22 a=1 
----------------------UGGAUUCUCUUUGUAUAGAGCU------------ l=22 a=2 (ma)
---------------------------UCUCUUUGUAUAGAGCUUCGUGC------ l=23 a=1 
----------------------------CUCUUUGUAUAGAGCUUCGUGC------ l=22 a=1 
-----------------------------UCUUUGUAUAGAGCUUCGUG------- l=20 a=1 
-----------------------------UCUUUGUAUAGAGCUUCGUGCU----- l=22 a=1 

mb-00010
ax-0011010
ku-01
ss-111110101000
fn-101
